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Clairlib: http://www.clairlib.org/. The Clair library is a suite of open-source Perl modules for generic tasks in natural language processing (NLP), information retrieval (IR), and network analysis (NA). Clairlib is used to compute centrailiies in Ignet.

Interaction Network Ontology (INO): https://sourceforge.net/projects/ino/. INO is an ontology in the domain of interaction networks. INO is used in Ignet to identify exact interaction types.

PubMed: http://www.ncbi.nlm.nih.gov/pubmed/. PubMed comprises more than 19 million citations for biomedical literature from MEDLINE, life science journals, and online books.