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Documentation

Key references:

Ozgur A, Radev DR, He Y. Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology. Journal of Biomedical Semantics. In press.

Ozgur A, Xiang Z, Radev DR, He Y. Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks. J Biomed Biotechnol. 2010;2010:426479. Epub 2010 Jun 3. PMID: 20625487. PMCID: PMC2896678.

Ozgur A, Radev DR, He Y. Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology. Proceedings of Bio-Ontologies: Semantic Applications in Life Sciences, 2010, the 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA.

 

Other Related References:

Ozgur A, Vu T, Erkan G, Radev DR: Identifying gene-disease associations using centrality on a literature mined gene-interaction network. Bioinformatics 2008, 24(13):i277-285.

Erkan G, Ozgur A, Radev DR: Semi-supervised classification for extracting protein interaction sentences using dependency parsing. In: Proceedings of the 2007 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL), 2007: 228-237.